Index

_

__add__() (Requirements method) (Transform method) __contains__() (Message method)

__delitem__() (Message method) __getitem__() (Message method) __setitem__() (Message method)

A

accel_range (I2C_9DOF property) acceleration (I2C_9DOF property) ACCELRANGE_16G (I2C_9DOF attribute) ACCELRANGE_2G (I2C_9DOF attribute) ACCELRANGE_4G (I2C_9DOF attribute) ACCELRANGE_8G (I2C_9DOF attribute) Accuracy (class in autopilot.tasks.graduation) acquisition_mode (Camera_Spinnaker property) add() (in module autopilot.prefs) add_model() (ListModelWidget method) add_pilot() (Control_Panel method) add_sound() (Sound_Widget method) add_step() (Protocol_Wizard method) age (Biography property) Agent (class in autopilot.agents.base) ALLOWED_FPS (MLX90640 attribute) alpha (Kalman property) Angle (class in autopilot.transform.geometry) args (Input attribute) (Interface_Map attribute) ask() (in module autopilot.utils.wiki) assign_cb() (Digital_In method) (Hardware method) (Wheel method) assign_protocol() (Subject method) assigned (Protocol_Status attribute) ATTR_TYPE_NAMES (Camera_Spinnaker attribute) ATTR_TYPES (Camera_Spinnaker attribute) attrs (H5F_Node attribute) AUDIO (Scopes attribute) autopilot.agents module autopilot.agents.base module autopilot.agents.pilot module autopilot.agents.terminal module autopilot.data module autopilot.data.interfaces module autopilot.data.interfaces.base module autopilot.data.interfaces.datajoint module autopilot.data.interfaces.nwb module autopilot.data.interfaces.tables module autopilot.data.modeling module autopilot.data.modeling.base module autopilot.data.models module autopilot.data.models.biography module autopilot.data.models.protocol module autopilot.data.models.researcher module autopilot.data.models.subject module autopilot.data.subject module autopilot.data.units module autopilot.gui module autopilot.gui.dialog module autopilot.gui.menus module autopilot.gui.menus.file module autopilot.gui.menus.plots module autopilot.gui.menus.plugins module autopilot.gui.menus.swarm module autopilot.gui.menus.tests module autopilot.gui.menus.tools module autopilot.gui.plots module autopilot.gui.plots.geom module autopilot.gui.plots.info module autopilot.gui.plots.plot module autopilot.gui.plots.video module autopilot.gui.widgets module autopilot.gui.widgets.input module autopilot.gui.widgets.list module autopilot.gui.widgets.model module autopilot.gui.widgets.protocol module autopilot.gui.widgets.subject module

autopilot.gui.widgets.terminal module autopilot.hardware module autopilot.hardware.cameras module autopilot.hardware.gpio module autopilot.hardware.i2c module autopilot.hardware.usb module autopilot.networking module autopilot.networking.message module autopilot.networking.node module autopilot.networking.station module autopilot.prefs module autopilot.root module autopilot.setup module autopilot.setup.run_script module autopilot.setup.scripts module autopilot.setup.setup_autopilot module autopilot.stim module autopilot.stim.managers module autopilot.stim.sound module autopilot.stim.sound.base module autopilot.stim.sound.jackclient module autopilot.stim.sound.pyoserver module autopilot.stim.sound.sounds module autopilot.tasks module autopilot.tasks.children module autopilot.tasks.free_water module autopilot.tasks.graduation module autopilot.tasks.nafc module autopilot.tasks.task module autopilot.transform module autopilot.transform.coercion module autopilot.transform.geometry module autopilot.transform.image module autopilot.transform.logical module autopilot.transform.selection module autopilot.transform.timeseries module autopilot.transform.transforms module autopilot.transform.units module autopilot.utils module autopilot.utils.common module autopilot.utils.decorators module autopilot.utils.hydration module autopilot.utils.invoker module autopilot.utils.log_parsers module autopilot.utils.loggers module autopilot.utils.plugins module autopilot.utils.registry module autopilot.utils.requires module autopilot.utils.types module autopilot.utils.wiki module autopilot.viz module autopilot.viz.psychometric module autopilot.viz.trial_viewer module Autopilot_Object (class in autopilot.root)

B

backend (Camera_CV property) bailed (Nafc.TrialData attribute) Bandwidth_Test (class in autopilot.gui.menus.tests) BASE_TYPES (in module autopilot.data.modeling.base) baselines (Biography attribute) BCM_TO_BOARD (in module autopilot.hardware) Bias_Correction (class in autopilot.stim.managers) bin (Camera_Spinnaker property) bio (Subject property) biography (NWB_Interface attribute) blank_LEDs() (Pilot method) blank_pilot_db() (in module tests.test_terminal) BLOCKSIZE (in module autopilot.stim.sound.jackclient)

BOARD_TO_BCM (in module autopilot.hardware) bool (Interface_Mapset attribute) BoolInput (class in autopilot.gui.widgets.input) boot_server() (JackClient method) box (Enclosure attribute) branch (Git_Spec attribute) breeding (Biography attribute) browse() (in module autopilot.utils.wiki) buffer() (Gap method) (Jack_Sound method) buffer_continuous() (Jack_Sound method) building (Enclosure attribute) buttons (Stream_Video attribute) bytes (Interface_Mapset attribute)

C

calc_move() (Wheel method) calc_psychometric() (in module autopilot.viz.psychometric) calibrate() (I2C_9DOF method) calibrate_port() (Pilot method) calibrate_ports() (Terminal method) Calibrate_Water (class in autopilot.gui.menus.tools) calibration (Hardware property) calibration_curve() (Pilot method) call_series() (in module autopilot.setup.run_script) cam (Camera property) cam_info (Stream_Video attribute) Camera (class in autopilot.hardware.cameras) Camera_CV (class in autopilot.hardware.cameras) camera_selected() (Stream_Video method) Camera_Spinnaker (class in autopilot.hardware.cameras) capture() (Camera method) capture_deinit() (Camera method) (Camera_Spinnaker method) (PiCamera method) capture_init() (Camera method) (Camera_Spinnaker method) (MLX90640 method) (PiCamera method) check_all() (Psychometric method) check_compatible() (Transform method) check_depends() (Protocol_Wizard method) check_slice() (DLCSlice method) check_thresh() (Wheel method) checked (ModelWidget property) Child (class in autopilot.tasks.children) children (Group attribute) (H5F_Group attribute) CHILDREN (REGISTRIES attribute) choices (LiteralInput attribute) chunk() (Gap method) (Jack_Sound method) clean_prefs() (in module tests.test_prefs) clear() (in module autopilot.prefs) clear_cb() (Digital_In method)

clear_params() (Graduation_Widget method) (Protocol_Wizard method) (Sound_Widget.Add_Sound_Dialog method) clear_scripts() (in module autopilot.hardware.gpio) closeEvent() (Stream_Video method) (Terminal method) closing (Net_Node attribute) coerce_discrete() (in module autopilot.utils.common) Color (class in autopilot.transform.units) Colorspaces (class in autopilot.transform.units) COLS (Accuracy attribute) (Graduation attribute) columns (Free_Water.TrialData attribute) (Task.TrialData attribute) comboboxes (Stream_Video attribute) commit (Git_Spec attribute) COMMON (Scopes attribute) Compare (class in autopilot.transform.logical) compute_calibration() (in module autopilot.prefs) compute_correction() (Stim_Manager method) Condition (class in autopilot.transform.logical) context (Net_Node attribute) CONTINUOUS (in module autopilot.stim.sound.jackclient) continuous_data (Step_Data attribute) continuous_group (Step_Group attribute) CONTINUOUS_LOOP (in module autopilot.stim.sound.jackclient) CONTINUOUS_QUEUE (in module autopilot.stim.sound.jackclient) Control_Panel (class in autopilot.gui.widgets.terminal) conversion (Interface_Map attribute) CONVERSIONS (Color attribute) conversions (Log_Format attribute) correct (Nafc.TrialData attribute) correction (Nafc.TrialData attribute) create_modelzoo() (DLC method) create_subject() (Control_Panel method) (Pilot_Panel method) current_camera (Stream_Video property) current_pilot (Stream_Video property) current_trial (Protocol_Status attribute) (Subject property)

D

data (Data_Extract attribute) DATA (Free_Water attribute) data (Subject_Schema attribute) Data_Extract (class in autopilot.utils.log_parsers) date (Weights attribute) datetime (Interface_Mapset attribute) DatetimeInput (class in autopilot.gui.widgets.input) DC_timestamp (Nafc.TrialData attribute) default (LiteralInput attribute) default() (NumpyEncoder method) dehydrate() (in module autopilot.utils.hydration) delete_all_scripts() (Digital_Out method) delete_script() (Digital_Out method) description (Biography attribute) (H5F_Table attribute) description_to_model() (in module autopilot.data.interfaces.tables) device_info (Camera_Spinnaker property) dict() (ListModelWidget method) (ModelWidget method) DictInput (class in autopilot.gui.widgets.input)

Digital_In (class in autopilot.hardware.gpio) Digital_Out (class in autopilot.hardware.gpio) DIRECTORY (Scopes attribute) discrim() (Nafc method) Distance (class in autopilot.transform.geometry) DLC (class in autopilot.transform.image) dlc_dir (DLC property) dlc_paths (DLC property) DLCSlice (class in autopilot.transform.selection) do_bias() (Stim_Manager method) do_correction() (Stim_Manager method) dob (Biography attribute) download_plugin() (Plugins method) Drag_List (class in autopilot.gui.widgets.list) dragEnterEvent() (Drag_List method) dragMoveEvent() (Drag_List method) dropEvent() (Drag_List method) (Subject_List method) dur_from_vol() (Solenoid method) duration (Solenoid property) DURATION_MIN (Solenoid attribute)

E

ENABLED (in module autopilot.hardware.gpio) enclosure (Biography attribute) end() (Free_Water method) (Jack_Sound method) (Stim_Manager method) (Task method) (Wheel_Child method) entries (Log attribute)

equals (Interface_Map attribute) event() (Invoker method) EVENT_TYPE (InvokeEvent attribute) example (Log_Format attribute) expand() (Message method) expectedrows (H5F_Table attribute) export_model() (DLC method) exposure (Camera_Spinnaker property) extract_data() (in module autopilot.utils.log_parsers)

F

FIFO (TransformRhythm attribute) File (class in autopilot.stim.sound.sounds) file_block (Pilot attribute) fileDropped (Drag_List attribute) files_dropped() (Sound_Widget method) FILO (TransformRhythm attribute) Filter_IIR (class in autopilot.transform.timeseries) filters (H5F_Node attribute) find_class() (in module autopilot.utils.common) find_key_recursive() (in module autopilot.utils.common) find_key_value() (in module autopilot.utils.common) fit() (Spheroid method) flash() (LED_RGB method) flash_leds() (Nafc method) (Task method) flatten_dict() (in module autopilot.utils.common) float (Interface_Mapset attribute) FloatInput (class in autopilot.gui.widgets.input) format (Log_Format attribute) format_in (Angle attribute) (Color attribute) (Condition property) (Distance attribute) (DLC property) (DLCSlice attribute) (Image property) (Rescale attribute) (Slice attribute) (Transform property)

format_out (Angle attribute) (Color attribute) (Condition property) (Distance attribute) (DLC property) (DLCSlice attribute) (Image property) (Rescale attribute) (Slice attribute) (Transform property) forward() (Transformer method) fps (Camera_CV property) (Camera_Spinnaker property) (MLX90640 property) (PiCamera property) frame_trigger (Camera_Spinnaker property) Free_Water (class in autopilot.tasks.free_water) Free_Water.TrialData (class in autopilot.tasks.free_water) from_logfile() (Log class method) from_pytables_description() (Table class method) from_string() (LogEntry class method) from_type() (Input class method) FS (in module autopilot.stim.sound.jackclient)

G

Gammatone (class in autopilot.stim.sound.sounds) (class in autopilot.transform.timeseries) Gap (class in autopilot.stim.sound.sounds) generate() (Spheroid method) genes (Genotype attribute) genotype (Biography attribute) get() (Camera_Spinnaker method) (in module autopilot.prefs) (in module autopilot.utils.registry) (Interface_Mapset method) get_hardware() (in module autopilot.utils.registry) get_invoker() (in module autopilot.utils.invoker) get_ip() (Pilot method) (Station method) get_name() (Hardware method) get_names() (in module autopilot.utils.registry) get_nsamples() (Jack_Sound method) (Sound method) get_sound_class() (in module autopilot.stim.sound.base) get_stream() (Net_Node method) get_task() (in module autopilot.utils.registry)

get_timestamp() (Message method) get_trial_data() (Subject method) get_weight() (Subject method) git (Python_Package attribute) Git_Spec (class in autopilot.utils.requires) git_version() (in module autopilot.prefs) GPIO (class in autopilot.hardware.gpio) Graduation (class in autopilot.tasks.graduation) GRADUATION (REGISTRIES attribute) Graduation_Widget (class in autopilot.gui.widgets.protocol) group (Interface_Mapset attribute) (Trial_Data attribute) gui_event() (in module autopilot.gui.plots.plot) gyro (I2C_9DOF property) gyro_filter (I2C_9DOF property) GYRO_HPF_CUTOFF (I2C_9DOF attribute) gyro_polarity (I2C_9DOF property) gyro_scale (I2C_9DOF property) GYROSCALE_2000DPS (I2C_9DOF attribute) GYROSCALE_245DPS (I2C_9DOF attribute) GYROSCALE_500DPS (I2C_9DOF attribute)

H

handle_listen() (Net_Node method) (Station method) handle_trigger() (Task method) handshake() (Pilot method) Hardware (class in autopilot.hardware) HARDWARE (Free_Water attribute) (Nafc attribute) (REGISTRIES attribute) (Task attribute) (Wheel_Child attribute) hardware_plugin() (in module tests.test_plugins)

hash (Hashes attribute) hashes (History_Group attribute) (Subject property) header (Data_Extract attribute) heartbeat() (Terminal method) history (History_Group attribute) (Subject property) (Subject_Schema attribute) HLine (class in autopilot.gui.plots.geom) HLS (Colorspaces attribute) HSV (Colorspaces attribute) hydrate() (in module autopilot.utils.hydration)

I

I2C_9DOF (class in autopilot.hardware.i2c) id (Biography attribute) (Hashes attribute) (Net_Node attribute) Image (class in autopilot.transform.image) ImageItem_TimedUpdate (class in autopilot.gui.plots.video) import_dlc() (DLC method) import_plugins() (in module autopilot.utils.plugins) import_spec (Python_Package property) IMU_Orientation (class in autopilot.transform.geometry) info (Subject property) (Subject_Schema attribute) init() (in module autopilot.prefs) init_audio() (Pilot method) init_cam() (Camera method) (Camera_CV method) (Camera_Spinnaker method) (MLX90640 method) (PiCamera method) init_gui() (Video method) init_hardware() (Task method) init_logger() (in module autopilot.utils.loggers) init_manager() (in module autopilot.stim.managers) init_networking() (Hardware method) (Net_Node method) init_pigpio() (GPIO method) (Pilot method) init_plots() (Plot method) (Plot_Widget method) init_sound() (File method) (Gap method) (Jack_Sound method) (Noise method) (Tone method) init_sounds() (Stim_Manager method)

init_sounds_grouped() (Proportional method) init_sounds_individual() (Proportional method) init_ui() (Bandwidth_Test method) (Calibrate_Water method) (Control_Panel method) (Pilot_Panel method) (Pilot_Ports method) (Plugins method) (Psychometric method) (Reassign method) (Stream_Video method) (Weights method) initUI() (Terminal method) input (Camera attribute) Input (class in autopilot.gui.widgets.input) input (Digital_In attribute) (Hardware attribute) (Wheel attribute) inputs (ModelWidget attribute) int (Interface_Mapset attribute) int_to_float() (in module autopilot.stim.sound.sounds) Integrate (class in autopilot.transform.timeseries) integrate_frames (MLX90640 property) interpolate (MLX90640 property) interpolate_frame() (MLX90640 method) IntInput (class in autopilot.gui.widgets.input) Introspect (class in autopilot.utils.decorators) INVERSE_PULL_MAP (in module autopilot.hardware.gpio) INVERSE_TRIGGER_MAP (in module autopilot.hardware.gpio) InvokeEvent (class in autopilot.utils.invoker) Invoker (class in autopilot.utils.invoker) ip (Net_Node property) is_trigger (Digital_In attribute) (Hardware attribute) iter_continuous() (Jack_Sound method) (Noise method)

J

Jack_Sound (class in autopilot.stim.sound.base)

JackClient (class in autopilot.stim.sound.jackclient) join() (ReturnThread method)

K

Kalman (class in autopilot.transform.timeseries)

kwargs (Input attribute) (Interface_Map attribute)

L

l_bandwidth() (Pilot method) l_cal_port() (Pilot method) l_cal_result() (Pilot method) l_change() (Pilot_Station method) (Terminal_Station method) l_child() (Pilot_Station method) l_clear() (Wheel method) l_cohere() (Pilot_Station method) l_confirm() (Net_Node method) (Station method) l_continuous() (Pilot_Station method) (Terminal_Station method) l_data() (Plot method) (Terminal method) (Terminal_Station method) l_file() (Pilot_Station method) (Terminal_Station method) l_forward() (Pilot_Station method) l_frame() (Stream_Video method) l_handshake() (Terminal method) (Terminal_Station method) l_init() (Terminal_Station method) l_kill() (Station method) l_measure() (Wheel method) l_noop() (Pilot_Station method) l_param() (Pilot method) (Plot method) l_ping() (Pilot_Station method) (Terminal method) (Terminal_Station method) l_process() (Transformer method) l_progress() (Pilot_Ports method) l_start() (Camera method) (Pilot method) (Pilot_Station method) (Plot method) l_state() (Pilot_Station method) (Plot method) (Terminal method) (Terminal_Station method) l_stop() (Camera method) (Pilot method) (Pilot_Station method) (Plot method) (Wheel method)

l_stopall() (Terminal_Station method) l_stream() (Net_Node method) (Station method) l_stream_video() (Pilot method) LED_RGB (class in autopilot.hardware.gpio) level (LogEntry attribute) Line (class in autopilot.gui.plots.geom) LINEAGE (Scopes attribute) Linefit_Prasad (class in autopilot.transform.geometry) list_classes() (in module autopilot.utils.common) list_modelzoo() (DLC class method) list_options() (Camera_Spinnaker method) list_plugins() (Plugins method) list_scripts() (in module autopilot.setup.run_script) list_spinnaker_cameras() (in module autopilot.hardware.cameras) list_subjects() (in module autopilot.utils.common) list_wiki_plugins() (in module autopilot.utils.plugins) listens (Net_Node attribute) ListInput (class in autopilot.gui.widgets.input) ListModelWidget (class in autopilot.gui.widgets.model) LiteralInput (class in autopilot.gui.widgets.input) litter (Breeding attribute) load_model() (DLC method) load_pilotdb() (in module autopilot.utils.common) load_subject_data() (in module autopilot.viz.trial_viewer) load_subject_dir() (in module autopilot.viz.trial_viewer) locate_user_dir() (in module autopilot.setup.setup_autopilot) Log_Format (class in autopilot.utils.loggers) LOG_FORMATS (in module autopilot.utils.loggers) logger (Digital_In attribute) (Digital_Out attribute) (Hardware attribute) (I2C_9DOF attribute) (LED_RGB attribute) (MLX90640 attribute) (Pilot attribute) (PWM attribute) (Scale attribute) (Solenoid attribute) (Wheel attribute) logger_registry_get() (in module tests.test_registry) loop (Net_Node attribute) (Pilot_Station attribute) (Station attribute) (Terminal_Station attribute) loop_thread (Net_Node attribute)

M

mag_gain (I2C_9DOF property) MAGGAIN_12GAUSS (I2C_9DOF attribute) MAGGAIN_16GAUSS (I2C_9DOF attribute) MAGGAIN_4GAUSS (I2C_9DOF attribute) MAGGAIN_8GAUSS (I2C_9DOF attribute) magnetic (I2C_9DOF property) main() (in module autopilot.setup.setup_autopilot) make() (H5F_Group method) (H5F_Node method) (H5F_Table method) (Input method) (Interface method) (LiteralInput method) (NWB_Interface method) (Subject_Structure method) (Tables_Interface method) make_alias() (in module autopilot.setup.setup_autopilot) make_ask_string() (in module autopilot.utils.wiki) make_biography() (in module autopilot.data.interfaces.nwb) make_browse_string() (in module autopilot.utils.wiki) make_dir() (in module autopilot.setup.setup_autopilot) make_ectopic_dirnames() (in module autopilot.setup.setup_autopilot) make_launch_script() (in module autopilot.setup.setup_autopilot) make_punishment() (Stim_Manager method) make_systemd() (in module autopilot.setup.setup_autopilot) make_transform() (in module autopilot.transform) manage_plugins() (Terminal method) map (Interface attribute) (Tables_Interface attribute) mass (Baselines attribute) maximum (Condition property) measurement_of_state() (Kalman method) Message (class in autopilot.networking.message) message (LogEntry attribute) MESSAGE_FORMATS (in module autopilot.utils.loggers) met (Python_Package property) (Requirement property) (Requirements property) method_calls (DatetimeInput attribute) (Input attribute) minimum (Condition property) minimum_mass (Baselines property) minimum_pct (Baselines attribute) MLX90640 (class in autopilot.hardware.i2c) model (DLC property) MODEL (Scale attribute) model_dir (DLC property) Model_Filler_Dialogue (class in autopilot.gui.widgets.model) model_to_description() (in module autopilot.data.interfaces.tables) model_widgets (ListModelWidget attribute) ModelWidget (class in autopilot.gui.widgets.model) MODES (Wheel attribute) module autopilot.agents autopilot.agents.base autopilot.agents.pilot autopilot.agents.terminal autopilot.data autopilot.data.interfaces autopilot.data.interfaces.base autopilot.data.interfaces.datajoint autopilot.data.interfaces.nwb autopilot.data.interfaces.tables autopilot.data.modeling autopilot.data.modeling.base autopilot.data.models autopilot.data.models.biography autopilot.data.models.protocol autopilot.data.models.researcher autopilot.data.models.subject autopilot.data.subject autopilot.data.units autopilot.gui autopilot.gui.dialog autopilot.gui.menus autopilot.gui.menus.file autopilot.gui.menus.plots autopilot.gui.menus.plugins autopilot.gui.menus.swarm autopilot.gui.menus.tests autopilot.gui.menus.tools autopilot.gui.plots autopilot.gui.plots.geom autopilot.gui.plots.info autopilot.gui.plots.plot autopilot.gui.plots.video autopilot.gui.widgets autopilot.gui.widgets.input autopilot.gui.widgets.list autopilot.gui.widgets.model autopilot.gui.widgets.protocol autopilot.gui.widgets.subject autopilot.gui.widgets.terminal autopilot.hardware autopilot.hardware.cameras autopilot.hardware.gpio autopilot.hardware.i2c autopilot.hardware.usb autopilot.networking autopilot.networking.message autopilot.networking.node autopilot.networking.station autopilot.prefs autopilot.root autopilot.setup autopilot.setup.run_script autopilot.setup.scripts autopilot.setup.setup_autopilot autopilot.stim autopilot.stim.managers autopilot.stim.sound autopilot.stim.sound.base autopilot.stim.sound.jackclient autopilot.stim.sound.pyoserver autopilot.stim.sound.sounds autopilot.tasks autopilot.tasks.children autopilot.tasks.free_water autopilot.tasks.graduation autopilot.tasks.nafc autopilot.tasks.task autopilot.transform autopilot.transform.coercion autopilot.transform.geometry autopilot.transform.image autopilot.transform.logical autopilot.transform.selection autopilot.transform.timeseries autopilot.transform.transforms autopilot.transform.units autopilot.utils autopilot.utils.common autopilot.utils.decorators autopilot.utils.hydration autopilot.utils.invoker autopilot.utils.log_parsers autopilot.utils.loggers autopilot.utils.plugins autopilot.utils.registry autopilot.utils.requires autopilot.utils.types autopilot.utils.wiki autopilot.viz autopilot.viz.psychometric autopilot.viz.trial_viewer tests.test_networking tests.test_plugins tests.test_prefs tests.test_registry tests.test_setup tests.test_sound tests.test_terminal tests.test_transforms_geometry tests.test_utils

MOVE_DTYPE (Wheel attribute)

N

Nafc (class in autopilot.tasks.nafc) name (Gene attribute) (H5F_Node property) (History attribute) (LogEntry attribute) (Python_Package attribute) (Requirement attribute) (Researcher attribute) (System_Library attribute) Net_Node (class in autopilot.networking.node) networking (Pilot attribute) new() (Subject class method) new_pilot() (Terminal method) new_protocol() (Terminal method) new_subject() (Terminal method)

New_Subject_Wizard (class in autopilot.gui.widgets.subject) New_Subject_Wizard.Task_Tab (class in autopilot.gui.widgets.subject) next_bias() (Bias_Correction method) next_stim() (Proportional method) (Stim_Manager method) no_underscore_all_caps() (in module autopilot.root) node (Interface_Mapset attribute) (Pilot attribute) Noise (class in autopilot.stim.sound.sounds) noop() (Transformer method) (Video_Child method) (Wheel_Child method) NTrials (class in autopilot.tasks.graduation) NumpyDecoder (class in autopilot.utils.common) NumpyEncoder (class in autopilot.utils.common)

O

object_hook() (NumpyDecoder method) open() (Solenoid method) open_file() (Pilot method) OPENCV_LAST_INIT_TIME (in module autopilot.hardware.cameras) Order_Points (class in autopilot.transform.geometry)

output (Digital_Out attribute) (Hardware attribute) (LED_RGB attribute) (PWM attribute) (Solenoid attribute) output_filename (Camera property)

P

package_name (Python_Package attribute) package_version (Python_Package property) PARAMS (Accuracy attribute) (File attribute) (Free_Water attribute) (Gammatone attribute) (Gap attribute) (Graduation attribute) (Jack_Sound attribute) (Nafc attribute) (Noise attribute) (NTrials attribute) (Sound attribute) (Task attribute) (Tone attribute) (Video_Child attribute) (Wheel_Child attribute) parent (H5F_Node property) (Transform property) parents (Breeding attribute) parse() (Log_Format method) parse_args() (in module autopilot.setup.setup_autopilot) parse_manual_prefs() (in module autopilot.setup.setup_autopilot) parse_message() (LogEntry method) ParseError pass_set_param_function() (Sound_Widget method) past_protocols (History_Group attribute) (Subject_Schema attribute) path (H5F_Node attribute) (Step_Group attribute) permissiveness (FloatInput attribute) (Input attribute) (IntInput attribute) (StrInput attribute) PiCamera (class in autopilot.hardware.cameras) PiCamera.PiCamera_Writer (class in autopilot.hardware.cameras) pig (Digital_In attribute) (Digital_Out attribute) (LED_RGB attribute) (PWM attribute) (Solenoid attribute) pigs_function (Digital_Out attribute) (PWM attribute) Pilot (class in autopilot.agents.pilot) pilot (Protocol_Status attribute) PILOT (Scopes attribute) Pilot_Button (class in autopilot.gui.widgets.terminal) Pilot_Panel (class in autopilot.gui.widgets.terminal) Pilot_Ports (class in autopilot.gui.menus.tools) Pilot_Station (class in autopilot.networking.station) pilots (Terminal property) pin (GPIO property) (Hardware attribute) (LED_RGB property) pin_bcm (LED_RGB property) ping_pilot() (Terminal method) PLAY (in module autopilot.stim.sound.jackclient) play() (Gap method) (Jack_Sound method) (Pyo_Sound method) play_continuous() (Jack_Sound method) play_punishment() (Stim_Manager method) play_started (JackClient attribute) Plot (class in autopilot.gui.plots.plot) PLOT (Free_Water attribute) (Nafc attribute) (Task attribute) PLOT_LIST (in module autopilot.gui.plots.geom) plot_params (Psychometric property) plot_psychometric() (in module autopilot.viz.psychometric) (Terminal method) plot_timer (Terminal_Station attribute) Plot_Widget (class in autopilot.gui.plots.plot) Plugins (class in autopilot.gui.menus.plugins)

Point (class in autopilot.gui.plots.geom) polarity (GPIO property) (PWM property) pop_dialog() (in module autopilot.gui.dialog) populate_cameras() (Stream_Video method) populate_list() (Subject_List method) populate_lists() (Sound_Widget method) populate_params() (Graduation_Widget method) (Protocol_Wizard method) (Sound_Widget.Add_Sound_Dialog method) populate_steps() (Psychometric method) (Reassign method) populate_variables() (Psychometric method) port (Net_Node attribute) predict() (Kalman method) prepare_message() (Net_Node method) (Station method) prepare_run() (Subject method) process() (Angle method) (Color method) (Compare method) (Condition method) (Distance method) (DLC method) (DLCSlice method) (Filter_IIR method) (Gammatone method) (IMU_Orientation method) (Integrate method) (JackClient method) (Kalman method) (Linefit_Prasad method) (Order_Points method) (Rescale method) (Rotate method) (Slice method) (Spheroid method) (Transform method) process_test() (Bandwidth_Test method) Proportional (class in autopilot.stim.managers) protocol (Protocol_Group attribute) (Protocol_Status attribute) (Subject property) (Subject_Schema attribute) protocol_changed() (New_Subject_Wizard.Task_Tab method) protocol_name (Protocol_Group attribute) (Protocol_Status attribute) (Subject property) Protocol_Wizard (class in autopilot.gui.menus.file) protocols (Terminal property) Psychometric (class in autopilot.gui.menus.plots) pull (GPIO property) (LED_RGB property) PULL_MAP (in module autopilot.hardware.gpio) pulse() (Digital_Out method) (LED_RGB method) punish() (Nafc method) push() (Station method) pusher (Pilot_Station attribute) (Station attribute) (Terminal_Station attribute) PWM (class in autopilot.hardware.gpio) pyo_server() (in module autopilot.stim.sound.pyoserver) Pyo_Sound (class in autopilot.stim.sound.base) Python_Package (class in autopilot.utils.requires) python_type (BoolInput attribute) (DatetimeInput attribute) (DictInput attribute) (FloatInput attribute) (Input attribute) (IntInput attribute) (ListInput attribute) (LiteralInput attribute) (StrInput attribute)

Q

Q_LOCK (in module autopilot.stim.sound.jackclient) quantize_duration() (Jack_Sound method) QUEUE (in module autopilot.stim.sound.jackclient)

queue() (Camera method) quit() (JackClient method) quitting (Pilot attribute)

R

range (Input attribute) (LED_RGB property) (PWM property) readable_attributes (Camera_Spinnaker property) Reassign (class in autopilot.gui.menus.tools) reassign_protocols() (Terminal method) record_event() (Digital_In method) recurse_subclasses() (in module autopilot.utils.common) register_msg() (Bandwidth_Test method) REGISTRIES (class in autopilot.utils.registry) reinforcement() (Nafc method) release() (Camera method) (Camera_CV method) (Camera_Spinnaker method) (Digital_In method) (Digital_Out method) (GPIO method) (Hardware method) (LED_RGB method) (MLX90640 method) (Net_Node method) (PiCamera method) (PWM method) (Station method) (Video method) (Wheel method) remove_model() (ListModelWidget method) remove_sound() (Sound_Widget method) remove_step() (Protocol_Wizard method) remove_subject() (Pilot_Panel method) rename_step() (Protocol_Wizard method) reorder_steps() (Protocol_Wizard method) repeat() (Net_Node method) (Station method) repeat_interval (Net_Node attribute) (Station attribute) repository (Python_Package attribute)

request() (Nafc method) Requirement (class in autopilot.utils.requires) Requirements (class in autopilot.utils.requires) requirements (Requirements attribute) Rescale (class in autopilot.transform.units) reset() (Transform method) reset_ui() (Terminal method) residual_of() (Kalman method) resolution (PiCamera property) resolve() (Python_Package method) (Requirement method) (Requirements method) resolve_type() (in module autopilot.data.interfaces.base) respond() (Nafc method) response (Nafc.TrialData attribute) response() (Free_Water method) results_string() (in module autopilot.setup.setup_autopilot) ReturnThread (class in autopilot.utils.common) RGB (Colorspaces attribute) rhythm (Transform property) Roll_Mean (class in autopilot.gui.plots.geom) room (Enclosure attribute) Rotate (class in autopilot.transform.geometry) rotation (I2C_9DOF property) (PiCamera property) router (Net_Node attribute) RQ_timestamp (Nafc.TrialData attribute) run() (JackClient method) (ReturnThread method) (Station method) (Video_Writer method) run_form() (in module autopilot.setup.setup_autopilot) run_script() (in module autopilot.setup.run_script) run_scripts() (in module autopilot.setup.run_script) run_task() (Pilot method) running (Pilot attribute) RW_MODES (Camera_Spinnaker attribute)

S

save() (Bandwidth_Test method) save_data() (Subject method) save_prefs() (in module autopilot.prefs) Scale (class in autopilot.hardware.usb) schema_ (Interface attribute) (Tables_Interface attribute) Scopes (class in autopilot.prefs) SCRIPTS (in module autopilot.setup.scripts) Segment (class in autopilot.gui.plots.geom) select_plugin() (Plugins method) select_plugin_type() (Plugins method) send() (Net_Node method) (Station method) send_test() (Bandwidth_Test method) senders (Net_Node attribute) sensor_mode (PiCamera property) sent_plot (Terminal_Station attribute) serialize() (Message method) serialize_array() (in module autopilot.networking) series() (Digital_Out method) SERVER (in module autopilot.stim.sound.jackclient) server (Pilot attribute) server_type (Jack_Sound attribute) (Sound attribute) session (Protocol_Status attribute) (Subject property) (Trial_Data attribute) (Weights attribute) session_uuid (Subject property) (Trial_Data attribute) set() (Camera_Spinnaker method) (Digital_Out method) (in module autopilot.prefs) (LED_RGB method) (PWM method) set_graduation() (Protocol_Wizard method) set_leds() (Task method) set_param() (Protocol_Wizard method) set_protocol() (Reassign method) set_reward() (Task method) set_sounds() (Protocol_Wizard method) set_state() (Pilot_Button method) set_step() (Reassign method) set_trigger() (Jack_Sound method) (Pyo_Sound method) set_triggers() (Proportional method) (Stim_Manager method) set_weight() (Subject method) (Weights method) setImage() (ImageItem_TimedUpdate method) setValue() (BoolInput method) (DatetimeInput method) (DictInput method) (FloatInput method) (Input method) (IntInput method) (ListInput method) (ListModelWidget method) (LiteralInput method) (ModelWidget method) (StrInput method) sex (Biography attribute) SEX (in module autopilot.data.models.biography) Shaded (class in autopilot.gui.plots.geom) shape (Camera_CV property) (Image property) SHAPE_SENSOR (MLX90640 attribute) simple_time() (History class method) (Weights class method) Slice (class in autopilot.transform.selection) Solenoid (class in autopilot.hardware.gpio) Sound (class in autopilot.stim.sound.base) SOUND (REGISTRIES attribute) Sound_Widget (class in autopilot.gui.widgets.protocol) Sound_Widget.Add_Sound_Dialog (class in autopilot.gui.widgets.protocol) spawn_terminal() (in module tests.test_terminal) species (Biography attribute) Spheroid (class in autopilot.transform.geometry) stage_block (Pilot attribute) STAGE_NAMES (Free_Water attribute) (Nafc attribute) (Task attribute) (Wheel_Child attribute)

start (Weights attribute) start() (Bandwidth_Test method) (Video_Child method) (Wheel method) start_calibration() (Pilot_Ports method) start_date (Biography attribute) start_plot_timer() (Terminal_Station method) start_timer() (Timer method) state (GPIO property) staticMetaObject (Bandwidth_Test attribute) (Calibrate_Water attribute) (Control_Panel attribute) (Drag_List attribute) (Graduation_Widget attribute) (HLine attribute) (ImageItem_TimedUpdate attribute) (Invoker attribute) (Line attribute) (ListModelWidget attribute) (Model_Filler_Dialogue attribute) (ModelWidget attribute) (New_Subject_Wizard attribute) (New_Subject_Wizard.Task_Tab attribute) (Pilot_Button attribute) (Pilot_Panel attribute) (Pilot_Ports attribute) (Plot attribute) (Plot_Widget attribute) (Plugins attribute) (Point attribute) (Protocol_Wizard attribute) (Psychometric attribute) (Reassign attribute) (Roll_Mean attribute) (Segment attribute) (Shaded attribute) (Sound_Widget attribute) (Sound_Widget.Add_Sound_Dialog attribute) (Stream_Video attribute) (Subject_List attribute) (Terminal attribute) (Timer attribute) (Video attribute) (Weights attribute) Station (class in autopilot.networking.station) step (Protocol_Status attribute) (Step_Group attribute) (Subject property) step_changed() (New_Subject_Wizard.Task_Tab method) step_name (Step_Group attribute) step_viewer() (in module autopilot.viz.trial_viewer) steps (Protocol_Data attribute) (Protocol_Group attribute) stim_end() (Nafc method) Stim_Manager (class in autopilot.stim.managers) stim_start() (Nafc method) STOP (in module autopilot.stim.sound.jackclient) stop (Weights attribute) stop() (Camera method) (Video_Child method) stop_continuous() (Jack_Sound method) stop_run() (Subject method) stop_script() (Digital_Out method) stop_timer() (Timer method) store_groups() (Proportional method) store_param() (Graduation_Widget method) (Sound_Widget.Add_Sound_Dialog method) store_series() (Digital_Out method) str (Interface_Mapset attribute) strain (Genotype attribute) stream() (Camera method) Stream_Video (class in autopilot.gui.menus.swarm) stream_video() (Terminal method) STRING_PARAMS (in module autopilot.stim.sound.sounds) StrInput (class in autopilot.gui.widgets.input) Subject (class in autopilot.data.subject) Subject_List (class in autopilot.gui.widgets.terminal) subject_list (Terminal property) subject_protocols (Terminal property) subject_weights() (Terminal method) System_Library (class in autopilot.utils.requires)

T

table (Sound attribute) table_wrap() (Pyo_Sound method) tabs (Protocol_Group attribute) tag (Git_Spec attribute) tags (Biography attribute) target (Nafc.TrialData attribute) Task (class in autopilot.tasks.task) task (Pilot attribute) TASK (REGISTRIES attribute) task (Step_Data attribute) (Subject property) Task.TrialData (class in autopilot.tasks.task) temperature (I2C_9DOF property) Terminal (class in autopilot.agents.terminal) TERMINAL (Scopes attribute) Terminal_Station (class in autopilot.networking.station) test_autoplugin() (in module tests.test_plugins) test_bandwidth() (Terminal method) test_blosc() (in module tests.test_networking) test_except_on_failure() (in module tests.test_registry) test_get_all() (in module tests.test_registry) test_get_equivalence() (in module tests.test_registry) test_get_hardware() (in module tests.test_registry) test_get_one() (in module tests.test_registry) test_get_subtree() (in module tests.test_registry) test_get_task() (in module tests.test_registry) test_hardware_plugin() (in module tests.test_plugins) test_init_multichannel_noise() (in module tests.test_sound) test_init_noise() (in module tests.test_sound) test_make_alias() (in module tests.test_setup) test_multihop() (in module tests.test_networking) test_node() (in module tests.test_networking) test_node_to_node() (in module tests.test_networking) test_prefs_defaults() (in module tests.test_prefs) test_prefs_deprecation() (in module tests.test_prefs) test_prefs_warnings() (in module tests.test_prefs) test_quiet_mode() (in module tests.test_setup) test_spheroid_generate_fit() (in module tests.test_transforms_geometry) test_spheroid_init() (in module tests.test_transforms_geometry) test_spheroid_process() (in module tests.test_transforms_geometry) test_terminal_launch() (in module tests.test_terminal) test_unpadded_gap() (in module tests.test_sound) tests.test_networking module tests.test_plugins module tests.test_prefs module tests.test_registry module tests.test_setup module tests.test_sound module

tests.test_terminal module tests.test_transforms_geometry module tests.test_utils module threaded_loop() (Net_Node method) thresh_trig() (Wheel method) THRESH_TYPES (Wheel attribute) thresholded_linear() (Bias_Correction method) time (Hashes attribute) (History attribute) Timer (class in autopilot.gui.plots.info) timestamp (LogEntry attribute) title (H5F_Node attribute) to_df() (Table method) to_pytables_description() (Table class method) toggle() (Digital_Out method) (LED_RGB method) toggle_start() (Pilot_Button method) (Stream_Video method) (Terminal method) Tone (class in autopilot.stim.sound.sounds) Transform (class in autopilot.transform.transforms) TRANSFORM (REGISTRIES attribute) Transformer (class in autopilot.tasks.children) TransformRhythm (class in autopilot.transform.transforms) trial_data (Step_Data attribute) (Step_Group attribute) trial_data_table (Step_Data attribute) trial_num (Trial_Data attribute) trial_viewer() (in module autopilot.viz.trial_viewer) trigger (GPIO property) (Wheel attribute) TRIGGER_MAP (in module autopilot.hardware.gpio) turn() (Digital_Out method) type (Camera attribute) (Camera_Spinnaker attribute) (Digital_In attribute) (Digital_Out attribute) (File attribute) (Gammatone attribute) (Gap attribute) (Hardware attribute) (History attribute) (Jack_Sound attribute) (LED_RGB attribute) (MLX90640 attribute) (Noise attribute) (PWM attribute) (Solenoid attribute) (Sound attribute) (Tone attribute) (Wheel attribute)

U

unload_plugins() (in module autopilot.utils.plugins) update() (Accuracy method) (Bias_Correction method) (Graduation method) (Kalman method) (Line method) (NTrials method) (Point method) (Roll_Mean method) (Segment method) (Shaded method) (Stim_Manager method) update_db() (Control_Panel method)

update_frame() (Video method) update_history() (Subject method) update_img() (ImageItem_TimedUpdate method) update_pbar() (Bandwidth_Test method) update_protocols() (Terminal method) update_state() (Pilot method) update_step_box() (New_Subject_Wizard.Task_Tab method) update_time() (Timer method) update_volumes() (Pilot_Ports method) update_weights() (Subject method) upstream (Net_Node attribute) URL (class in autopilot.utils.types) url (Git_Spec attribute)

V

v4l_info (Camera_CV property) validate() (Message method) (ModelWidget method) validate_list() (Bandwidth_Test method) validator (FloatInput attribute) (Input attribute) (IntInput attribute) value (History attribute) value() (BoolInput method) (DatetimeInput method) (DictInput method) (FloatInput method) (Input method) (IntInput method) (ListInput method) (ListModelWidget method) (LiteralInput method) (ModelWidget method) (StrInput method)

version (Hashes attribute) (Requirement attribute) Video (class in autopilot.gui.plots.video) Video_Child (class in autopilot.tasks.children) Video_Writer (class in autopilot.hardware.cameras)

W

wait_trigger() (Jack_Sound method) walk_dicts() (in module autopilot.utils.common) water() (Free_Water method) Weights (class in autopilot.gui.menus.tools) weights (History_Group attribute) (Subject property) Wheel (class in autopilot.hardware.usb) Wheel_Child (class in autopilot.tasks.children) widget (BoolInput attribute) (DatetimeInput attribute) (DictInput attribute) (FloatInput attribute) (Input attribute) (IntInput attribute) (ListInput attribute) (LiteralInput attribute) (StrInput attribute)

writable_attributes (Camera_Spinnaker property) write() (Camera method) (Camera_Spinnaker method) (PiCamera.PiCamera_Writer method) write_to_outports() (JackClient method) write_video() (Stream_Video method) writer (Stream_Video attribute)

Y

YIQ (Colorspaces attribute)

Z

zygosity (Gene attribute)